Front Page › Forums › BioMap › Error about import imzML file
- This topic has 9 replies, 2 voices, and was last updated 9 years, 6 months ago by
Markus Stoeckli.
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April 7, 2016 at 10:23 am #1598
koala
ParticipantWhen I import an imzML file, the error occur. Does anyone know how to solve this?Thanks!
Attachments:April 7, 2016 at 10:34 am #1600koala
Participantsorry [img size=478]http://www.maldi-msi.org/images/fbfiles/images/error-7f743fb16fcef2a9dc6af0d5cdd133cb.jpg[/img]
Attachments:April 14, 2016 at 11:53 am #1601Markus Stoeckli
ModeratorThis seems to be an issue with the file you try to open. If you created this yourself, check the headers for correct dimensions.
Markus
April 14, 2016 at 1:10 pm #1604koala
ParticipantHi!
Thanks for your reply!
I tried to import the file on a desktop PC, it’s OK.
Later I installed BioMap on my laptop, it didn’t work and error.
I reinstalled BioMap several times, just the same.April 14, 2016 at 1:12 pm #1605koala
Participantmy file [file name=Imaging0406_04.zip size=32589]http://www.maldi.ms/images/fbfiles/files/Imaging0406_04.zip[/file]
Attachments:April 14, 2016 at 1:14 pm #1606koala
Participantanother one [file name=Imaging0405_03.zip size=49995]http://www.maldi.ms/images/fbfiles/files/Imaging0405_03.zip[/file]
Attachments:April 14, 2016 at 2:51 pm #1607Markus Stoeckli
ModeratorThe files you attached are not the full data set. You need to copy also the binary files to the same directory in order to open them.
Markus
April 15, 2016 at 4:54 am #1608koala
ParticipantOK.I will try to copy all raw data together.
Thanks!April 19, 2016 at 11:03 am #1609koala
ParticipantMALDI Solution software export two kind files: imzML and ibd.
I put them together in the same directory, not work.
The ibd file is too big. Sorry I can’t upload it.April 20, 2016 at 4:12 pm #1610Markus Stoeckli
ModeratorPlease let me summarize what I read from your posts: You can open imzML files with BioMap on one computer, but when you transfer them to another one they fail to open? Deducting from this I assume that the file format is correct. It is important to keep the xml and binary files together – see also the information in [url=http://www.imzml.org/index.php?option=com_content&view=article&id=191&Itemid=65]this link[/url].
You might try to copy the files to a simple path, e.g. C:Temp to check if it is an issue with a special character in the path name.
Markus
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